rs33890328 SNP Detail

Summary

• ID
  rs33890328
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:115896262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AGCAAGGAGA AAACCAAGAA AAAAATGAAT AGTTTGCAAA AATTGGACTT CCTCCCCCCC
  TCTCTGGTAG GTATTTTGTC TTTCCCTCTC TCTCTTTCTC GCTCGCTCTC ACTCGCGCTC
  GCTCTCTCGC GCTCTCTTTC TCTCTCTGGG AGATGAGTGA GTGTCAGTAG GTGTTGGCAG
  GTTGGCTGCA GCCGGGCTTA TAGTAGAGCC TCAGTTTGGC GGCGCGGGTC GGCGGCGGGA
  GAACGAAATG ACGGAACCCG GAAGTCGTGG TGGCCATAGC CCGTCCTACG GCGGAGACAC
  R
  TCCCGAGAGT GGGGAGCTGG AGCGAGGAGG AGCGCGCAGC GCGGAGCCTC TGATATGCAG
  CGAGTGCGGT CGGACGGCCC CGGGGGGGGG GGGGGGGGCT GTTGGCTCTT CTTGGTAAGA
  GCAGGGTGAG GGTGTAGCAA GAAGAAGAGA CTGGGTCTTG CTATAAACAG CCCAGGTTGG
  CCTGGAAATT TCAGTTTTTC TGGGGTGAGG ATTGCAGGTG TGTGCTAAAC ATGTTACATC
  TTTTCTATTG TACAAAATTA CTATTATTTG TGTGTGTGCA CGGTGAGGGT GTAAGAGAAC
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45329769	mCV24828252	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33890328					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:115896262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
2700033N17Rik	RIKEN cDNA 2700033N17 gene			408 bp downstream
G630016G05Rik	RIKEN cDNA G630016G05 gene			1444 bp upstream
Meis2	Meis homeobox 2			Intron
				mRNA-UTR
Rr562985	regulatory region 562985			1153 bp distal
Rr562986	regulatory region 562986			244 bp distal
Rr562987	regulatory region 562987			48 bp proximal
Rr562988	regulatory region 562988			911 bp proximal
Rr562989	regulatory region 562989			1697 bp proximal
Tssr19467	transcription start site region 19467			1432 bp upstream
Tssr25720	transcription start site region 25720			1881 bp upstream
Tssr25721	transcription start site region 25721			1183 bp upstream
Tssr25722	transcription start site region 25722			1032 bp upstream
Tssr25723	transcription start site region 25723			1010 bp upstream
Tssr25724	transcription start site region 25724			648 bp upstream
Tssr25725	transcription start site region 25725			543 bp upstream
Tssr25726	transcription start site region 25726			125 bp upstream
Tssr25727	transcription start site region 25727			92 bp upstream
Tssr25728	transcription start site region 25728			76 bp upstream
Tssr25729	transcription start site region 25729			46 bp upstream
Tssr25730	transcription start site region 25730			4 bp downstream
Tssr25731	transcription start site region 25731			17 bp downstream
Tssr25732	transcription start site region 25732			163 bp downstream
Tssr25733	transcription start site region 25733			253 bp downstream
Tssr25734	transcription start site region 25734			1344 bp downstream
Tssr25735	transcription start site region 25735			1374 bp downstream
Tssr25736	transcription start site region 25736			1574 bp downstream
Tssr25737	transcription start site region 25737			1610 bp downstream