rs33863315 SNP Detail

Summary

• ID
  rs33863315
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148213326 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTCT GAGTAAGCTT CCCAGGATTA
  M
  AGAAACTGCT GAGCTGGTTT CCTGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45593386	mCV24936118	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss147993913	ENSMUSSNP2411135	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss321417514	CHEV_4_147502978	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33863315					SNP	A	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148213326 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	1203 bp proximal
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	1515 bp upstream
Rr604596	regulatory region 604596	371 bp proximal
Rr604597	regulatory region 604597	1218 bp proximal
Rr604598	regulatory region 604598	1819 bp proximal
Tssr1378	transcription start site region 1378	1964 bp upstream
Tssr40251	transcription start site region 40251	1873 bp upstream
Tssr40252	transcription start site region 40252	1906 bp upstream
Tssr44585	transcription start site region 44585	1769 bp downstream
Tssr44586	transcription start site region 44586	1782 bp downstream
Tssr44587	transcription start site region 44587	1809 bp downstream