rs33862728 SNP Detail

Summary

• ID
  rs33862728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156268527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCA CCCCTATTGC CTCCAGTCTC
  Y
  GGTTTACTCC TATGCTATAG TGTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45551540	mCV22727613	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss136128459	ENSMUSSNP6100016	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss321033462	CHEV_3_156225854	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33862728					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156268527 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	1144 bp upstream
Cpgi13974	CpG island 13974	256 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	1248 bp distal
Rr587960	regulatory region 587960	911 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	764 bp distal
Tssr32476	transcription start site region 32476	1021 bp downstream
Tssr32477	transcription start site region 32477	897 bp downstream
Tssr32478	transcription start site region 32478	757 bp downstream
Tssr32479	transcription start site region 32479	694 bp downstream
Tssr32480	transcription start site region 32480	200 bp downstream
Tssr32481	transcription start site region 32481	94 bp downstream
Tssr36286	transcription start site region 36286	1115 bp upstream