rs33800604 SNP Detail

Summary

• ID
  rs33800604
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5775847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTCAT GAGTAATTTT GTCTTTTTCT CATGCATGAG
  CTGGGTCCTG TTAGAGGCGC AATCCTATCT TGATGGAATC TAGTTTGTCT GCTTTGTTTC
  Y
  CTGCTTGAGG AGAAAAAGGA ACACAGTGAG GAGGGTAAAG TCAATGGAGT TAGAGGGGGC
  ATGCTCCTAA AGGCTAACAC TTTGAAGAAG CACAGGAAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss47347165	NES11362385	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	C3H/HeJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs33800604					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347165	NES11362385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5775847 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	1203 bp upstream
Gm57599	predicted gene, 57599	234 bp downstream
Rr387902	regulatory region 387902	1141 bp downstream
Rr474522	regulatory region 474522	1135 bp distal
Tssr121308	transcription start site region 121308	1390 bp upstream