rs33798093 SNP Detail

Summary

• ID
  rs33798093
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5774176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCACAAT ACTAGTCTCT
  TTGCTTCATA ATCTGAGATT TAACAGGACT TGAGGGCAAA AAGAGACAGT TGTAGGGACA
  AGTCCAGACA GTTCAAAACG CATTCTACTA CCATGTGCTG CTTTGTGTGT TCATATTGAC
  AATCATTTCA AACACTATCT GGATTTCTTT TTCATTCATG AAGTTTGCCA GATAATCACC
  R
  TTAGAGATAG GGGTCAGAAT GCCAGAACAA GAACTCAGAC CCATTCATAG ATATAAAAAA
  CAAATAAAAT ATAATGAGGA GTAATTAAAA TATATAAAAT ACTCATTTCA TACAAAAACT
  ACTCGTACAA ATTACGATGC AGTTGTGACT AGTATCATAA TTCTGCGCAC TAAAAAAAGG
  CCTGGAGCAT GCAAATGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss47347144	NES11362429	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		G	G	A		G
ss324223063	CHEV_13_5723423	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs33798093					SNP	G	G	G	G	G	G	G	G	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47347144	NES11362429	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5774176 () rs orientation: forward

Symbol	Name	Function Class
Gm35330	predicted gene, 35330	within coordinates
Gm57599	predicted gene, 57599	1295 bp upstream
Rr387902	regulatory region 387902	within coordinates
Rr474521	regulatory region 474521	668 bp distal
Rr474522	regulatory region 474522	245 bp proximal
Tssr121308	transcription start site region 121308	262 bp downstream