rs33756283 SNP Detail

Summary

• ID
  rs33756283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23248969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCATCCTCC GGGACTCGAG GGGGTCTGGG GGGTGAGGTC
  GGGAGGTGGT GCTCATTCCC TGAATCAAGG AGTCGCTGCA GCTCGAGCCG CGTCTGGACC
  R
  TTTGGAAGAC ACCAGCAGGT AACTGGCCTC CCAAAATGCC CTTGAGATGT AAAGGCCTTG
  GGAGGCTTGT TATGCGTTTG TGGTTTTGTC AAAGCGATGC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838074	NES11695108	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33756283					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838074	NES11695108	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23248969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	within coordinates
Rr627164	regulatory region 627164	422 bp distal
Rr627165	regulatory region 627165	201 bp proximal
Rr627166	regulatory region 627166	702 bp proximal
Rr627167	regulatory region 627167	783 bp proximal
Tssr55159	transcription start site region 55159	422 bp downstream
Tssr55160	transcription start site region 55160	342 bp downstream
Tssr55161	transcription start site region 55161	192 bp downstream
Tssr55162	transcription start site region 55162	133 bp downstream
Tssr59962	transcription start site region 59962	580 bp upstream