rs33756281 SNP Detail

Summary

• ID
  rs33756281
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23248115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGAAG TGGGGGACCG
  GCAGGGCCTT AGGCTCAGGG GTGCGCGCCA TGATTCGTTC GATGGAGAAA GCCAAGGGTT
  TAGATGTGCT CATCACGTTG CCCCGAGCTG GAGCAGTCGC TAGCATTTTG GTGGTCGCGT
  TGAGGCAGCT ACTGTCCATG ACTGAGTCGC CAGCGTCGGT CAGCCGGGGT TGAGTCGCGG
  R
  ATCGTTGCCT TGTCCCCTGC TTGTCACAGA CCTGCGGAGA GGACAGGCAC CGTCACCACC
  AGCAGCCTCC TCCTCCTCCT CCCCAGCATC ACCAGCCGAA CCTGCCTGCC CAGCCCAATG
  GACTCCTGCC AGCCCATCGC AGAGTTCTTG GCGCACCAAT GACTCGGGGA CAATCACTAC
  TTATTTCTAT CAATAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838072	NES11695106	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33756281					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838072	NES11695106	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23248115 () rs orientation: forward

Symbol	Name	Function Class
Fezf1	Fez family zinc finger 1	mRNA-UTR
Gm56925	predicted gene, 56925	395 bp upstream
Rr627164	regulatory region 627164	236 bp proximal
Rr627165	regulatory region 627165	1055 bp proximal
Rr627166	regulatory region 627166	1556 bp proximal
Rr627167	regulatory region 627167	1637 bp proximal
Tssr55159	transcription start site region 55159	422 bp upstream
Tssr55160	transcription start site region 55160	503 bp upstream
Tssr55161	transcription start site region 55161	650 bp upstream
Tssr55162	transcription start site region 55162	712 bp upstream
Tssr59962	transcription start site region 59962	255 bp downstream