rs33756279 SNP Detail

Summary

• ID
  rs33756279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23247999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGATG GAGAAAGCCA AGGGTTTAGA
  Y
  GTGCTCATCA CGTTGCCCCG AGCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47838070	NES11695105	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T		T	C	T	T		T
ss321767793	CHEV_6_23198000	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33756279					SNP	T	T	T	T	T	C	T	T	C	T	C	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838070	NES11695105	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23247999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Coding-Synonymous
Gm56925	predicted gene, 56925	511 bp upstream
Rr627164	regulatory region 627164	352 bp proximal
Rr627165	regulatory region 627165	1171 bp proximal
Rr627166	regulatory region 627166	1672 bp proximal
Rr627167	regulatory region 627167	1753 bp proximal
Tssr55159	transcription start site region 55159	538 bp upstream
Tssr55160	transcription start site region 55160	619 bp upstream
Tssr55161	transcription start site region 55161	766 bp upstream
Tssr55162	transcription start site region 55162	828 bp upstream
Tssr59962	transcription start site region 59962	371 bp downstream