rs33755623 SNP Detail

Summary

• ID
  rs33755623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23247654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTACAACCA GTTTATTCCT
  TTCGGCTAAA TACGTTTTGG GCTGTGGGTG CAAAGGGGAA CTGAGAAAGT AGGAGGCCAC
  CGGGTGGATG TTCACGCTCG CAGCCGGGTG GCACGGGCCG TCACCTCGGT TCAGGTAGCA
  CAGGGCACCC ATGGCGTGAA ACGAAGAGTG GTTGACCACA CGCGGCCTTA CCAGCTTGTA
  Y
  TGCTGTAGTG GCAATGCGTC GCGGGCCAGG TCGCCCTTAA GACTTAGCGC GCAGTTGAGC
  AGGTCGCTGC AGCTGAACGC CGGCGCAGAG GGCGCCACCG CGGGCGGCGC CGGAACCTCC
  AAACTCGCCT TGCGGGGCTC TGAGCCATTC ACTCCCGCTT TGGAGTTCGT GTCGTACGCC
  ACGGGGACGA AAGGGATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838064	NES11695101	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33755623					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838064	NES11695101	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23247654 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17196	CpG island 17196	1687 bp distal
Cpgi17197	CpG island 17197	within coordinates
Fezf1	Fez family zinc finger 1	Coding-Synonymous
Gm56925	predicted gene, 56925	856 bp upstream
Rr627164	regulatory region 627164	697 bp proximal
Rr627165	regulatory region 627165	1516 bp proximal
Tssr55159	transcription start site region 55159	883 bp upstream
Tssr55160	transcription start site region 55160	964 bp upstream
Tssr55161	transcription start site region 55161	1111 bp upstream
Tssr55162	transcription start site region 55162	1173 bp upstream
Tssr59962	transcription start site region 59962	716 bp downstream