rs33755617 SNP Detail

Summary

• ID
  rs33755617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23246720 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGAAATCC TTTGCCGCAG
  AATTCACACA CGAATGGTTT GTAGCCCGCG TGAATTCGGG TATGTGTGTT TAACGTGGAA
  CTTCTGTTAA ATGCTTTACC GCACTGGTTG CACTTGTGAG GTTTCTCCTA AGCAGCAGAG
  AGAAAGGGAA GAATAGAGAA CTTAATTTAC AGTACTTGGT TATTGTGATG CGGAATCCTA
  Y
  CATCACCATA CACTTTGAAG CTTTTAAACA GGTCAAAGAT AACAACACAA GGCCTCCCAG
  TCCAGCCTCC ACAGCCCAGA AGGTCTTATG CTAAAGAATG AGGCTATATC GATGCGTTTT
  TCCCCCCAAA TGGTTCCAAA GCCTTTCGGG TAAACTTCTG ACGGAGGAAC ATACCTGTGT
  GTGAATGATC TTATGCCGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47838058	NES11695197	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33755617					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47838058	NES11695197	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23246720 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17196	CpG island 17196	753 bp distal
Cpgi17197	CpG island 17197	585 bp proximal
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	1790 bp upstream
Rr627164	regulatory region 627164	1631 bp proximal
Tssr55159	transcription start site region 55159	1817 bp upstream
Tssr55160	transcription start site region 55160	1898 bp upstream
Tssr59962	transcription start site region 59962	1650 bp downstream