rs33746406 SNP Detail

Summary

• ID
  rs33746406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156816208 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTTGTT TTAAAAACAA
  GGGCTACTTC TCACTTCTTA AAATAGTGTG CTTCAAACTT TAACGTACAC TCCCCTGGGG
  CTTTTATCAG TTTTAAGGGA TAACGGCTGA GCATGTGATC CATCACTAAG GATCAGGATC
  CTCTGAGATG AGAGAGTGAT CACTGACAGC ATTAATAGAG CTAGAGCTCT ATTAGTTCAT
  Y
  CTGCCATCTC CCCAAAAAGA ATACATCCAG TGTTTTTTAT ATAATAAACT ACATGGATCT
  TAAAAAAGAC TCAACAGGCC AGATCAACCA GGAGAATATA CCAGACAGAA GAGAGTGAGT
  CTGAGAGTCA CTGAGTGAGC TGAGTAGACC CAGCTGAGAG TGAGTCTTTC AAGCAGCTGG
  AATTATAAAT GTAAAGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45316069	mCV22553664	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss148088707	ENSMUSSNP6393162	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33746406					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156816208 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568396	regulatory region 568396			1056 bp distal
Rr568397	regulatory region 568397			484 bp proximal