rs33732548 SNP Detail

Summary

• ID
  rs33732548
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA ACCTCTTTTC CTGGGCGAGT
  W
  GAGGCTTCTG AAGAGCCGCC CGTGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45313874	mCV23507070	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss148318903	ENSMUSSNP2574577	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320619382	CHEV_2_172374313	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33732548					SNP	T	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390733 () rs orientation: forward

Symbol	Name	Function Class
Rr571697	regulatory region 571697	290 bp proximal
Rr571698	regulatory region 571698	1479 bp proximal
Rr571699	regulatory region 571699	1795 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	768 bp upstream
Tssr21967	transcription start site region 21967	823 bp upstream
Tssr21968	transcription start site region 21968	1948 bp upstream