rs33725190 SNP Detail

Summary

• ID
  rs33725190
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106592345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGAAA GGTTTGGCAG
  CAAAGACCTC AAGGATGTCT CCGCCTACAT CCCTAACCAG TCTTCTACTT ATGCGTGTTT
  CCCAGGCAAC CGACTTCAGC CGCTCTCTCG CGGGATCCGC AGTTTCCGGG CGTGATGTCA
  CAACTGAAGC TACAATAGCT GGTGCAGGAC TTTGATTTGG GAGCTGTATA CTTGAGCGTT
  Y
  CTAGATCTTT AGATCCGGAG CTCACTCTCC AGAGCCCTTT GCATCGCTTG GCTGTCATGG
  CTGGCGGGAC CCGCGCAAGG AGCAGGGCAA ACAAGGCAAA GCCGGTGAGT ACCGCTGGCG
  CTGAAGGACC AGCTGTCTGT GCAGCTTGAG TGAGCGGCAG AGGCTCTCGG ATCTTCACTG
  GTCAAGAGAA CCTCCTGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848511	NES10711566	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33725190					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848511	NES10711566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106592345 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm56790	predicted gene, 56790			within coordinates
Lrif1	ligand dependent nuclear receptor interacting factor 1			mRNA-UTR
				Noncoding-Transcript-Variant
Rr582860	regulatory region 582860			142 bp distal
Rr582861	regulatory region 582861			32 bp distal
Rr582862	regulatory region 582862			55 bp proximal
Tssr31131	transcription start site region 31131			8 bp downstream
Tssr34985	transcription start site region 34985			127 bp upstream