rs33725187 SNP Detail

Summary

• ID
  rs33725187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:106591890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGGCCT AACCTGAAGA
  AGCCATGGGT TCTCCAAACT GACTAAACCA AAATAGTGGC ACACAAGCCT TTAATGCCAG
  CACTCCAAAA CTGGAAGTAG AAACATTAGT TGAAAGTCAT CCTTAGCCTC ATCCAGTTAC
  TGACCAACCT GAGCTACACA AGATATTTCG TCCTTTTGAT TTTGAGAACT CTTTAAGGTA
  Y
  ATGTGTGGAG AAACCTAATC TTCATAAGGT ACATGTCGAT AAATTGTTAG TAATTAAGAT
  ATAAAATATA ATTGCTAGAT GTCTAAATGA AAAGCTACTA TGTACTTGCT TACCTTTTCC
  AACTTAACTT GAAAAGCACT CTTTTACTCT GTTTTACAAA GTTAAATGTT TGTTCCATGA
  TCACAGCTCA AAATTGCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46848508	NES10711565	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33725187					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46848508	NES10711565	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106591890 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13667	CpG island 13667	276 bp proximal
Gm56790	predicted gene, 56790	within coordinates
Lrif1	ligand dependent nuclear receptor interacting factor 1	413 bp upstream
Rr582860	regulatory region 582860	within coordinates
Rr582861	regulatory region 582861	314 bp proximal
Rr582862	regulatory region 582862	510 bp proximal
Tssr31131	transcription start site region 31131	369 bp upstream
Tssr34985	transcription start site region 34985	317 bp downstream