rs33667849 SNP Detail

Summary

• ID
  rs33667849
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236661 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGCACAC TCCCCGGCAC
  TGCCACCTGC TTTCTACTTC CTCGGGGAGA GGTGGTGGCG CGCGGGTCCT GGTCCAGCGG
  CTCCAAAGGC AGAACTAATG ATGAATCCGT GACTCCTAAC CCGGGAGCTC AAGTCTCAGC
  TCCCCGGGGT CGGTTCCGGG ACGGCGCGCG GCCCCAAGGT GGAAGGCTGA GAAGTTCCCC
  R
  CGGCGGAGCC GGGGCGAGGG GACCAGAGGG GAGGGGGCGG CGCCAGGTCG GAGCGCAGGA
  AGCCTCGGCC CGTGGGCCGG GACCGTGGGA AGCCAAGCTG GGGGCGGGGC CGCGCGGAGC
  CACCCAGGGG CCCGGCTCCG GGATTCCCCC TGATCGGGCG CGGGCAGAGA GGGGGCACCC
  TGGCCGCTAC CTGCTGTTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45306507	mCV25142690	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss146954254	ENSMUSSNP3393526	ENSEMBL	ENSEMBL_Sanger	f	SNP	G			A
ss320397652	CHEV_2_94246473	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33667849					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236661 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	391 bp upstream
Cpgi11962	CpG island 11962	within coordinates
Rr561373	regulatory region 561373	155 bp distal
Rr561374	regulatory region 561374	163 bp distal
Rr561375	regulatory region 561375	161 bp proximal
Rr561376	regulatory region 561376	353 bp proximal
Rr561377	regulatory region 561377	386 bp proximal
Rr561378	regulatory region 561378	440 bp proximal
Tssr19003	transcription start site region 19003	403 bp upstream
Tssr19004	transcription start site region 19004	447 bp upstream
Tssr25328	transcription start site region 25328	1314 bp upstream
Tssr25329	transcription start site region 25329	331 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron