rs33666451 SNP Detail

Summary

• ID
  rs33666451
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGTCAGTG GTAGAACTAC
  ATGCCTGGCA CACACAAGGC CCTGGAATTT AAGCACCAGA ATCAAAGAGC TTCCTGTCTG
  AGACATACAT GAGGTTTGCT TTGCACTTCC ATGGAGCAGT CTGTGAGGTA AATTGGCTTG
  GGGGATTTTT AACTCATCCA AACGATTGGC AAAACACGAA ACTAGGAAAA GCCACGATCC
  W
  CAGGAGGCTG TGTCCTCTCA GAATGGGTCA GGCTTGGACC TCACTTCCTT GGCTTCTAGC
  AATTAGGACC ATTTGGACAA ACCCTAAACC CTGCTACCTT CTTCAGCTAT GTGGTAGGCC
  TGCTACCATG CCTGTCTTCC ATGTGAGTCA GAGGGGAGTT ATGGGGCTAA CAGGAACTTT
  GGATGGCAAG TCTGCCCTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ
ss46841930	NES10707135	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ
rs33666451					SNP	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46841930	NES10707135	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721736 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1147 bp upstream
Rr582787	regulatory region 582787	655 bp proximal
Rr582788	regulatory region 582788	1170 bp proximal
Rr582789	regulatory region 582789	1713 bp proximal
Tssr31084	transcription start site region 31084	1110 bp upstream