rs33643774 SNP Detail

Summary

• ID
  rs33643774
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACACACAC GCACACACAC ACACACACAC ACACGCAGTC CTTAAAGCAT CAGCAGTATG
  AAAGCAAATG CAGATGCAGG CATCAGAAAG TTATATAAGA AAAGCGGTCA CTCCTCTGAG
  AAATCAGTTC AAGCATAGGT AATCTAGTAA ACTGCAAATG CTGAGTGCCG GGCTGGGTCA
  M
  AGGAACTAGG AAGCAATGTA AAATACACCG GGAAATGAGG GCACTTAAGA ACTGAATGAT
  GCGGGCACCG CCACCAGAGG CATGCATCTT CTGGCATTCC TTCAGAAGGA GCAAGAATGG
  GTTGTCTTTA AAGAGCCCCT AATGACCTGG CTAACGGCAC AGCCTCAAAC CACCACATCG
  CGAAACAAAT CCCATCAGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45303597	mCV25142679	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss146954243	ENSMUSSNP4799477	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss320397650	CHEV_2_94245997	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33643774					SNP	C	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236185 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	867 bp upstream
Cpgi11962	CpG island 11962	174 bp proximal
Rr561373	regulatory region 561373	within coordinates
Rr561374	regulatory region 561374	292 bp proximal
Rr561375	regulatory region 561375	637 bp proximal
Rr561376	regulatory region 561376	829 bp proximal
Rr561377	regulatory region 561377	862 bp proximal
Rr561378	regulatory region 561378	916 bp proximal
Tssr19003	transcription start site region 19003	879 bp upstream
Tssr19004	transcription start site region 19004	923 bp upstream
Tssr25328	transcription start site region 25328	838 bp upstream
Tssr25329	transcription start site region 25329	807 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron