rs33636287 SNP Detail

Summary

• ID
  rs33636287
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:48038695 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCT ATGCTCTAAC TCTGGAGTTC
  M
  CAAGTCACTT CCCTGTGGAC TGTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss39559701	mCV25139984	ABI	CRAMUS_MOUSE	f	SNP		A	C			C
ss48365361	NES12216390	PERLEGEN	MM_PANEL2	f	SNP	A		C	A	C	C	A		C	A		A
ss145708968	ENSMUSSNP1258480	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C			C
ss325406540	CHEV_17_47864719	CHEVERUD	SCREENING_POP	f	SNP								A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs33636287					SNP	A	A	C	A	C	C	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48365361	NES12216390	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48038695 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	Intron
Tssr5147	transcription start site region 5147	980 bp upstream
Tssr5148	transcription start site region 5148	1540 bp downstream
Tssr145003	transcription start site region 145003	922 bp downstream
Tssr145004	transcription start site region 145004	962 bp upstream
Tssr145005	transcription start site region 145005	990 bp upstream
Tssr145006	transcription start site region 145006	999 bp upstream
Tssr145007	transcription start site region 145007	1026 bp upstream
Tssr145008	transcription start site region 145008	1060 bp upstream
Tssr145009	transcription start site region 145009	1077 bp upstream
Tssr145010	transcription start site region 145010	1480 bp upstream
Tssr145011	transcription start site region 145011	1493 bp upstream
Tssr145012	transcription start site region 145012	1505 bp upstream
Tssr145013	transcription start site region 145013	1524 bp upstream
Tssr148459	transcription start site region 148459	1026 bp downstream
Tssr148460	transcription start site region 148460	1047 bp downstream
Tssr148461	transcription start site region 148461	1086 bp downstream
Tssr148462	transcription start site region 148462	1105 bp downstream
Tssr148463	transcription start site region 148463	1508 bp downstream
Tssr148464	transcription start site region 148464	1586 bp downstream