rs33629076 SNP Detail

Summary

• ID
  rs33629076
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180534619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGGCTAG GACCCCTTTC
  TTTCCCCCCC CCAGGAGAGA GAGGCTCAGA AGCCACTGTG TAGAGTGGTT ATTCCGGAAG
  GACCAGCCGC TTGTGTGAGG CAAGCACAGT GTGTTCGCTG CACAGCGGGG TGTGGCTGGT
  GGTGGGTGTA GAGGAGCTGC GGTCGGTGGG CTGCGGGAGA AGCTTTTGCG TGGGTCGTGC
  R
  GTAGGACAGA ATGAGCGGTT CGAGAGTGTC CAAGAGGCAG TTTCTCTGCA TACGTGTGAC
  CCCGGGGCGC CGGGCACAAT CGAAGGCGTT CGAGGGCTGC ATCCGTGTGA GTCGAGGAGC
  GCGCGGAGCG GGACGCCGAG CGTGTGCGCG GGAGGCACGG GTCGCGCGGT GCGTGAGTGC
  GCGTGTACGC GGTGCGCGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45301629	mCV24679532	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss148394563	ENSMUSSNP966944	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320632534	CHEV_2_180627531	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33629076					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180534619 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	1019 bp distal
Cpgi12908	CpG island 12908	within coordinates
Gm27032	predicted gene, 27032	Coding-Synonymous
Gm57443	predicted gene, 57443	within coordinates
Mir124a-3	microRNA 124a-3	1214 bp upstream
Rr572874	regulatory region 572874	1967 bp distal
Rr572875	regulatory region 572875	1497 bp distal
Rr572876	regulatory region 572876	996 bp distal
Rr572877	regulatory region 572877	59 bp distal
Rr572878	regulatory region 572878	within coordinates
Rr572879	regulatory region 572879	121 bp proximal
Rr572880	regulatory region 572880	220 bp proximal
Rr572881	regulatory region 572881	262 bp proximal
Rr572882	regulatory region 572882	587 bp proximal
Tssr22277	transcription start site region 22277	1973 bp downstream
Tssr22278	transcription start site region 22278	295 bp upstream
Tssr28138	transcription start site region 28138	105 bp downstream
Tssr28139	transcription start site region 28139	575 bp downstream
Tssr28140	transcription start site region 28140	582 bp downstream