rs33620822 SNP Detail

Summary

• ID
  rs33620822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156814409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCTGACTA AACCCACGGT GGACAGAAAT TATGCTCAAA
  TGATTTCATA AATCTATTCT AGTAAAGATC ATGGCTTACA GTGCAGCACA CCGCAGGTAT
  M
  TGCTGCTGTC CCCCATGCTT ACGAGGCTGT CTGGTGATAT GGTTGCTGCC TCTGTCTAGC
  ATGACAAGAG GCATTGAGCT ACATATCATT TGCTCAAGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45300846	mCV22553870	ABI	CRAMUS_MOUSE	f	SNP	A		C
ss148088678	ENSMUSSNP181523	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
ss320583279	CHEV_2_156798225	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33620822					SNP	A	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156814409 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1719 bp distal
Rr568396	regulatory region 568396			466 bp proximal
Tssr27080	transcription start site region 27080			1995 bp upstream
Tssr27081	transcription start site region 27081			1969 bp upstream
Tssr27082	transcription start site region 27082			1916 bp upstream