rs33618227 SNP Detail

Summary

• ID
  rs33618227
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156814635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAGTAGTTT TCTAGCATGG ATGTGGCCCT GGGTTCAATG
  TCCATCTTTA AAAAAAAAAT GTCTGAGACT TCTTTATTCA TTTTGTGTTT ATTAATCATA
  M
  AATAAACTGT GGCTGCATTC CATTTGGACT TTATATGGTC ATTCAGACCA TGTGAAAAAT
  AATACAATGA TAAAAAGATA CTTTACTTAC AGTTCTTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45300551	mCV22553860	ABI	CRAMUS_MOUSE	f	SNP	C	C	A
ss148088683	ENSMUSSNP4413909	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A
ss320583280	CHEV_2_156798451	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33618227					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156814635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ndrg3	N-myc downstream regulated gene 3			Intron
				Noncoding-Transcript-Variant
Rr568395	regulatory region 568395			1945 bp distal
Rr568396	regulatory region 568396			240 bp proximal