rs33599414 SNP Detail

Summary

• ID
  rs33599414
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167961362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTGGCAC CTCTTCCCCA
  GGACAGAGGC ACCTAGTTGG CAGGCAGCTT ACTAGTTCCA CATTTTCTCC TTCTCTTACT
  TCCTCTTTGG GGGACAAAGA GTTCAGAGGA GGTCTCTGGA AGCTCACGTG CCGGCAGGGG
  GGCCAGCCAG GTGTTTGAAG AGGGAAGTGG CTCCCCAGCT CCTGCCCGCT TGGCCAGATA
  Y
  GGCCAGACTG CCTTGTTTTT GCTAGGACAA GGATTCGTTT GTCTCGTTGG AGATTGAGGT
  TCCCCAGAGC ACAACAGCCA ATATCTCCAT CCCGTCCACT ACTCATACTT TGTCTAGTCC
  ATCACTGTCC TCTTTCTCTT TCTTTCTTTC TTTCTTTCTT TCTTTCTTTC TTTCTTTCTT
  TCTTTCTTTC TTTCTTTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45298385	mCV25281619	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss148266325	ENSMUSSNP5492314	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33599414					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167961362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12763	CpG island 12763	1488 bp distal
Gm52960	predicted gene, 52960	within coordinates
Rr570896	regulatory region 570896	1278 bp distal
Rr570898	regulatory region 570898	within coordinates
Tssr27826	transcription start site region 27826	249 bp upstream