rs33593119 SNP Detail

Summary

• ID
  rs33593119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCTATTCT CTAAGACCAT
  GGGGGAACGG TTGGCTTGAA CATCTATTTT AATTTTAGTT ACTTTACTTC AGGCCTATCT
  GGGTCTAGGG AAATGCTTAC AGACGAGGAG CAGGAAGAGA GCAAATTATT TTAGTCTGTG
  GATACGGGAG GCACGTTCCC AACAGGTCCT GGCCACTGGG CTGATGGGTA TCAAGAATTG
  Y
  GTAATTGGCT TCGGAATCAA TCCGAAATAG TCCCTGCCTC CAATTCCACT GTTTGAAGCC
  AATCTCCATA TACTGTTGGG ACGGACTAAC AAGATTAGCT CTCGAGAACT GTGGACTTTC
  TGTTTGGGAT GAAAAAAATT AACTATAACA ATTAGGCCAA TTATTTTCGT TTCGTTGAAT
  TAAAAAATAA CACTGAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45296678	mCV23507059	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T
ss148318891	ENSMUSSNP5285145	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		T
ss320619380	CHEV_2_172373908	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33593119					SNP	C	C	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390328 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	457 bp distal
Cpgi12824	CpG island 12824	279 bp proximal
Cpgi12825	CpG island 12825	851 bp proximal
Rr571697	regulatory region 571697	695 bp proximal
Rr571698	regulatory region 571698	1884 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	1173 bp upstream
Tssr21967	transcription start site region 21967	1228 bp upstream