rs33585417 SNP Detail

Summary

• ID
  rs33585417
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTCCCC CTCCCACTTT
  ACAGCACCTC ATTCCACGCG GCCCGTGGCG ATGGAGGTTT ATTCTGCCTG GAACCTCTTT
  TCCTGGGCGA GTAGAGGCTT CTGAAGAGCC GCCCGTGACA GCTGCAGAAC CGGCGCTCCG
  CAGGGCTGGG CATCGCAGCA GGGATGGGCC TGGGCGGGGG AGCTCGGGTC TCCTCCAGCC
  R
  CGGCCCGCAG CCAGATACAG CTTCGGGCTA TAGCTGCAGC ACGCGGTTGT CCGATTTATT
  CACAGCAGGT ATTACCGTGA GTTTCCTCTT TGGAGCTGGG GGAGCGGACT CCTTCTCGGA
  ATCCTTCCCC TCCCTTCCCT CAGTGGGCAG GTCAGTAAAG TACCCAGGGA GAGGGAAAGG
  GGGGGGGGGG CACTAGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45295780	mCV23507083	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss148318908	ENSMUSSNP2426082	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320619383	CHEV_2_172374421	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33585417					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390841 () rs orientation: forward

Symbol	Name	Function Class
Rr571697	regulatory region 571697	182 bp proximal
Rr571698	regulatory region 571698	1371 bp proximal
Rr571699	regulatory region 571699	1687 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	660 bp upstream
Tssr21967	transcription start site region 21967	715 bp upstream
Tssr21968	transcription start site region 21968	1840 bp upstream