rs33553279 SNP Detail

Summary

• ID
  rs33553279
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAACAA CAACAACAAA
  ATGTTTGCAT GACATCACAC TGAAAACGCG CCCATTGTAA CACCAGGGTC ATTATGCCGA
  TAGCACTCAT ATTCCCTTGG TGTCTCACCT TATTAAGTCA ATTCACCTTC TAGGTCTGCC
  TTTTCATCAG TGAAAATAAC AGCAGATCTC ATCTATTGAG AACTTTCTCA GTACCAGTTA
  Y
  TAACTAAGGT TCCATATTTA CCAATGTATT AACAGAACTA GAGTAAAACA CTTATCAAAG
  TAAATGACAG TAAACAGTAA ATTGAGACAG GTATAATGCG GCCTTAGATT CCCAAGCCAC
  CACAAGTATT GAATTAAAAA CGGATAGCCA GTTTTCACTG GTATCTTAGC CTTCCTTAAC
  GTACACATTT AAAACAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46827214	NES10869370	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	C	T	T	T		C	T	T	C		C
ss134671198	ENSMUSSNP3469284	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					T
ss320680117	CHEV_3_19794107	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33553279					SNP	T	T	C	T	T	T	C	T	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827214	NES10869370	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948271 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	875 bp upstream
Gm64742	predicted gene, 64742	749 bp upstream
Rr574033	regulatory region 574033	259 bp proximal
Rr574034	regulatory region 574034	690 bp proximal
Rr574035	regulatory region 574035	760 bp proximal
Rr574036	regulatory region 574036	916 bp proximal
Rr574037	regulatory region 574037	927 bp proximal
Tssr28531	transcription start site region 28531	748 bp upstream
Tssr28532	transcription start site region 28532	796 bp upstream
Tssr28533	transcription start site region 28533	989 bp upstream