rs33553277 SNP Detail

Summary

• ID
  rs33553277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGTGATCT AGATTAGAAA
  ACTTCAGTAA AAGTCTACTA ATATGATTCA AACAACAACA ACAACAAAAT GTTTGCATGA
  CATCACACTG AAAACGCGCC CATTGTAACA CCAGGGTCAT TATGCCGATA GCACTCATAT
  TCCCTTGGTG TCTCACCTTA TTAAGTCAAT TCACCTTCTA GGTCTGCCTT TTCATCAGTG
  R
  AAATAACAGC AGATCTCATC TATTGAGAAC TTTCTCAGTA CCAGTTATTA ACTAAGGTTC
  CATATTTACC AATGTATTAA CAGAACTAGA GTAAAACACT TATCAAAGTA AATGACAGTA
  AACAGTAAAT TGAGACAGGT ATAATGCGGC CTTAGATTCC CAAGCCACCA CAAGTATTGA
  ATTAAAAACG GATAGCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827211	NES10869369	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33553277					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827211	NES10869369	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948223 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	923 bp upstream
Gm64742	predicted gene, 64742	797 bp upstream
Rr574033	regulatory region 574033	307 bp proximal
Rr574034	regulatory region 574034	738 bp proximal
Rr574035	regulatory region 574035	808 bp proximal
Rr574036	regulatory region 574036	964 bp proximal
Rr574037	regulatory region 574037	975 bp proximal
Tssr28531	transcription start site region 28531	796 bp upstream
Tssr28532	transcription start site region 28532	844 bp upstream
Tssr28533	transcription start site region 28533	1037 bp upstream