rs33552108 SNP Detail

Summary

• ID
  rs33552108
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCATCAT CAGAGCAAGT
  TACTAGATAG GATGAATATG ACATAACCTG GGACTATTGT CGATACGGTA TTCCCAATGG
  CAGGGTTCCT CGGGCAGCAA AGGCCATGAG GAAGAGGATG AGAGGATGAC AGAAGGAGGA
  GCAACTTTGG GGGAAGCTTT GTGCTGTGTA GTTTTAGACA TCTGGTCTAG CATCAAGAGG
  W
  TACAGTTAAA GGAATATAGT GGCTCCTTCC TGTAATCCCA GAATTTGGAA AGAAGAGGCA
  GGGAAATCAA TTCCAAGACC ATCCTTAGCC ATAGAGAAAA TTTAGAGAGA TATACAAAAC
  AAAAATAATT TGAATGACTC CCTATGCAAC TAAGGCTGGC CATGAATACC TGACCCTCTG
  CCTCTATCTC TAGAGTGCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827199	NES10869484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33552108					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827199	NES10869484	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947540 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	1606 bp upstream
Cpgi13006	CpG island 13006	1182 bp proximal
Gm64742	predicted gene, 64742	1480 bp upstream
Rr574033	regulatory region 574033	990 bp proximal
Rr574034	regulatory region 574034	1421 bp proximal
Rr574035	regulatory region 574035	1491 bp proximal
Rr574036	regulatory region 574036	1647 bp proximal
Rr574037	regulatory region 574037	1658 bp proximal
Tssr28531	transcription start site region 28531	1479 bp upstream
Tssr28532	transcription start site region 28532	1527 bp upstream
Tssr28533	transcription start site region 28533	1720 bp upstream