rs33547393 SNP Detail

Summary

• ID
  rs33547393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948755 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTAACTGG AACCTAAGCT
  TGCAACCACC CAGCACAGCC GAGAAGCCTG CCCTAAGTCG CAAAACAATC AATCTTTAAG
  TGTATCCGTG GAATCGCTCA CTCCTAGGGC GCAAAGACCT GGCTATGACT CTGGGGAGAT
  AATTTGTCTC GCCCCAAACA CTTTTGTAAT TGATTTACCC GCAGTGTGTA TGCATACTAC
  Y
  TCTGTAAACA ACAAAGCTAG CAGCCCCAGA AGTTTGGGAA GCCCGCGCGT CCTACCGCGA
  CCACTCCCCG CCCCGCTGCA CTCTGGGAAA CGTAGTCCTA GCCAGTCTCT GAGCCTTTTA
  GTCTTCATAC AGTGAACCCT CAGCGCCTGT AAGGCCACAT TCGGTTGCGA ATCCGGGGCC
  GGCCTCTAAG CACATCAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827244	NES10869380	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33547393					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827244	NES10869380	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948755 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	391 bp upstream
Cpgi13006	CpG island 13006	within coordinates
Gm64742	predicted gene, 64742	265 bp upstream
Rr574033	regulatory region 574033	within coordinates
Rr574034	regulatory region 574034	206 bp proximal
Rr574035	regulatory region 574035	276 bp proximal
Rr574036	regulatory region 574036	432 bp proximal
Rr574037	regulatory region 574037	443 bp proximal
Tssr28531	transcription start site region 28531	264 bp upstream
Tssr28532	transcription start site region 28532	312 bp upstream
Tssr28533	transcription start site region 28533	505 bp upstream