rs33547388 SNP Detail

Summary

• ID
  rs33547388
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948626 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTGGTAT CTTAGCCTTC
  CTTAACGTAC ACATTTAAAA CAGTCCTGGA TGAGGAGTAC TATTAGAGTC ACCACCTTAC
  ACGATTTTTC AATCTTAACT AAGTATCTCA GGATCAAATA GTGGCACAGC CGTAACTGGA
  ACCTAAGCTT GCAACCACCC AGCACAGCCG AGAAGCCTGC CCTAAGTCGC AAAACAATCA
  R
  TCTTTAAGTG TATCCGTGGA ATCGCTCACT CCTAGGGCGC AAAGACCTGG CTATGACTCT
  GGGGAGATAA TTTGTCTCGC CCCAAACACT TTTGTAATTG ATTTACCCGC AGTGTGTATG
  CATACTACCT CTGTAAACAA CAAAGCTAGC AGCCCCAGAA GTTTGGGAAG CCCGCGCGTC
  CTACCGCGAC CACTCCCCGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827238	NES10869378	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33547388					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827238	NES10869378	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948626 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	520 bp upstream
Cpgi13006	CpG island 13006	96 bp proximal
Gm64742	predicted gene, 64742	394 bp upstream
Rr574033	regulatory region 574033	within coordinates
Rr574034	regulatory region 574034	335 bp proximal
Rr574035	regulatory region 574035	405 bp proximal
Rr574036	regulatory region 574036	561 bp proximal
Rr574037	regulatory region 574037	572 bp proximal
Tssr28531	transcription start site region 28531	393 bp upstream
Tssr28532	transcription start site region 28532	441 bp upstream
Tssr28533	transcription start site region 28533	634 bp upstream