rs33546313 SNP Detail

Summary

• ID
  rs33546313
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAACAGTCC TGGATGAGGA GTACTATTAG AGTCACCACC
  TTACACGATT TTTCAATCTT AACTAAGTAT CTCAGGATCA AATAGTGGCA CAGCCGTAAC
  Y
  GGAACCTAAG CTTGCAACCA CCCAGCACAG CCGAGAAGCC TGCCCTAAGT CGCAAAACAA
  TCAATCTTTA AGTGTATCCG TGGAATCGCT CACTCCTAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827232	NES10869376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33546313					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827232	NES10869376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948562 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	584 bp upstream
Gm64742	predicted gene, 64742	458 bp upstream
Rr574033	regulatory region 574033	within coordinates
Rr574034	regulatory region 574034	399 bp proximal
Rr574035	regulatory region 574035	469 bp proximal
Rr574036	regulatory region 574036	625 bp proximal
Rr574037	regulatory region 574037	636 bp proximal
Tssr28531	transcription start site region 28531	457 bp upstream
Tssr28532	transcription start site region 28532	505 bp upstream
Tssr28533	transcription start site region 28533	698 bp upstream