rs33546308 SNP Detail

Summary

• ID
  rs33546308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19948457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTACCA GTTATTAACT
  AAGGTTCCAT ATTTACCAAT GTATTAACAG AACTAGAGTA AAACACTTAT CAAAGTAAAT
  GACAGTAAAC AGTAAATTGA GACAGGTATA ATGCGGCCTT AGATTCCCAA GCCACCACAA
  GTATTGAATT AAAAACGGAT AGCCAGTTTT CACTGGTATC TTAGCCTTCC TTAACGTACA
  M
  ATTTAAAACA GTCCTGGATG AGGAGTACTA TTAGAGTCAC CACCTTACAC GATTTTTCAA
  TCTTAACTAA GTATCTCAGG ATCAAATAGT GGCACAGCCG TAACTGGAAC CTAAGCTTGC
  AACCACCCAG CACAGCCGAG AAGCCTGCCC TAAGTCGCAA AACAATCAAT CTTTAAGTGT
  ATCCGTGGAA TCGCTCACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46827226	NES10869374	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33546308					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46827226	NES10869374	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19948457 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	689 bp upstream
Cpgi13006	CpG island 13006	265 bp proximal
Gm64742	predicted gene, 64742	563 bp upstream
Rr574033	regulatory region 574033	73 bp proximal
Rr574034	regulatory region 574034	504 bp proximal
Rr574035	regulatory region 574035	574 bp proximal
Rr574036	regulatory region 574036	730 bp proximal
Rr574037	regulatory region 574037	741 bp proximal
Tssr28531	transcription start site region 28531	562 bp upstream
Tssr28532	transcription start site region 28532	610 bp upstream
Tssr28533	transcription start site region 28533	803 bp upstream