rs33526422 SNP Detail

Summary

• ID
  rs33526422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17109145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAAATGTT CATTGCAATG
  AGTCTGGTTT GAGGCCTCTG GCTTCTGCTA TACTATCAAT ACTGGAATCT CACTGGGGTT
  TCTCTCAGAT ATCCTGTTGT CGGTCTGTGT CGTGGAAACT CTGCAGCTTT GGATCTGCAG
  GACTGGCCCC TTCACACACT CCAGCATTTC ACAGATGGGG CAGATGTTGG GGTGAGCATA
  Y
  TCAAAGCCCT GGATCTGGGC CTGGGTTGGA GTTGCTGAAC CCATCAGCTT TCCTGTACCC
  AAGCCACCAG GCTAGGTCTA CTGTGCTGCC CAGGTGAAGC GCGGGGGCTT TCTGCTTATT
  TTAAACAAGA TATTACAGAT TGTCTCTTTT TAATAAGTCC TGACCATACT GCAGTGTCTG
  GTCTTTAAGC ATAGATTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss47808610	NES11712329	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs33526422					SNP	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808610	NES11712329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17109145 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626766	regulatory region 626766	within coordinates
Rr626767	regulatory region 626767	1534 bp proximal