rs33525488 SNP Detail

Summary

• ID
  rs33525488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17107419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAGAGGT GCTCAAGATA
  CCTGGACATG TTTGTTGTTA GTTGATGCCC ATGTTTGCTT CTGTTGCTAT GATAAACACC
  ATTACCATAA ACAGTTTCAG AGGGCATTTG GCTTACAGAT TAGAATCCCT TATTGAGGGA
  AACTCAGAAA GGATCCTAGA GCCAGAAACT GAAACAGACT TTGGAGAAAT GTTTCTACCA
  W
  CTTGTTCCTT TTGCCTTTCT TACACAACTC AGGCACATTT GCCTAGGAAT GATACCGCCC
  ACAGTGGGCT GGGCCCGCCT TCATCCATTA GCAATAAAAG AAAATGCCTC ATACACACAT
  CTCTTTTCAA GAGTCTACAA CACTGGTTCT CAACCTGTGT GTTGCGGCCC TTTCACTGGG
  GTCTCAAGGC CATCTGAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss47808594	NES11712747	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs33525488					SNP	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808594	NES11712747	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17107419 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626764	regulatory region 626764	1369 bp distal
Rr626765	regulatory region 626765	1516 bp distal
Rr626766	regulatory region 626766	1681 bp proximal
Tes	testin LIM domain protein	1595 bp downstream