rs33525484 SNP Detail

Summary

• ID
  rs33525484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17107327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGAAATG TGGGGATGGT
  GTAGATCCAC CAGGCCTGGA TCTCCCCTCA GTAGTTAGTT TGCCCTTGCA GTATAAGATT
  GTGGCCTCCT TGTCTAAGAG GTGCTCAAGA TACCTGGACA TGTTTGTTGT TAGTTGATGC
  CCATGTTTGC TTCTGTTGCT ATGATAAACA CCATTACCAT AAACAGTTTC AGAGGGCATT
  Y
  GGCTTACAGA TTAGAATCCC TTATTGAGGG AAACTCAGAA AGGATCCTAG AGCCAGAAAC
  TGAAACAGAC TTTGGAGAAA TGTTTCTACC ATCTTGTTCC TTTTGCCTTT CTTACACAAC
  TCAGGCACAT TTGCCTAGGA ATGATACCGC CCACAGTGGG CTGGGCCCGC CTTCATCCAT
  TAGCAATAAA AGAAAATGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
ss47808590	NES11712744	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NZW/LacJ	WSB/EiJ
rs33525484					SNP	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808590	NES11712744	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17107327 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626764	regulatory region 626764	1277 bp distal
Rr626765	regulatory region 626765	1424 bp distal
Rr626766	regulatory region 626766	1773 bp proximal
Tes	testin LIM domain protein	1503 bp downstream
Tssr55025	transcription start site region 55025	1951 bp downstream