rs33524314 SNP Detail

Summary

• ID
  rs33524314
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120810010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATGGAAAAAA CCAAGTGGCT GGATATCAAA GGAAATCATG GTAAATCTGC CAAGAGCAGA
  ATAGAATATA GCTTCCTTCA AAAATATAGA TTTTTCTAGT TTAGATTATA GAGTTATAAA
  ATGGAAAATT GTAACATAAA TTTGGACATA GTGAAGGCTA AATCTCTTAT GTGCAGCTAT
  AAAATACGAT ATTAAGACAT CAGAGACAGG TAGAGCTCTG TGAGTTTGGG GCCAGACTAG
  TTCTAGGTCA GCTAGGCTGC ATAGCAAAGC CCCTGTCTCA AAAAACAAAA CAAAACAAAA
  M
  AAAAAAAAAA AACAAAGAAC ATTGAGATGG AGATGTCATT GTTGGCCTTT CCAGTGAAAG
  TTGATATAGT GTTTTCTTCT TTATATGGGA GAAAGTGTTC TTCAGAAATT CTTGTGGGAA
  AATGTTTAAA ATGGGTAAAA TAAATAAATA AAATAGAAAC ACCCCTATAT GTGTTAAAAA
  AAAAAAAGAA ACTCCATCTA CATTTTCCTG TTGTATGATT CCATTTATAT GACATTCAAG
  AAAAGATAAA AACTATAGGC AGAAAGACAG GTTGTGGTTG CCAGAGGTAG AAATAGAAGG
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45288859	mCV22579230	ABI	CRAMUS_MOUSE	f	SNP	C	A	A
ss147374634	ENSMUSSNP6971541	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs33524314					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120810010 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12148	CpG island 12148			1648 bp distal
Gm55820	predicted gene, 55820			1802 bp upstream
Rr397244	regulatory region 397244			651 bp downstream
Rr563754	regulatory region 563754			1986 bp distal
Rr563757	regulatory region 563757			758 bp distal
Tmem62	transmembrane protein 62			Intron
				Noncoding-Transcript-Variant