rs33524175 SNP Detail

Summary

• ID
  rs33524175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACTTTA CAGCACCTCA
  TTCCACGCGG CCCGTGGCGA TGGAGGTTTA TTCTGCCTGG AACCTCTTTT CCTGGGCGAG
  TAGAGGCTTC TGAAGAGCCG CCCGTGACAG CTGCAGAACC GGCGCTCCGC AGGGCTGGGC
  ATCGCAGCAG GGATGGGCCT GGGCGGGGGA GCTCGGGTCT CCTCCAGCCA CGGCCCGCAG
  Y
  CAGATACAGC TTCGGGCTAT AGCTGCAGCA CGCGGTTGTC CGATTTATTC ACAGCAGGTA
  TTACCGTGAG TTTCCTCTTT GGAGCTGGGG GAGCGGACTC CTTCTCGGAA TCCTTCCCCT
  CCCTTCCCTC AGTGGGCAGG TCAGTAAAGT ACCCAGGGAG AGGGAAAGGG GGGGGGGGGC
  ACTAGGGAAC AGTGGGACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45289129	mCV23507084	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148318912	ENSMUSSNP2102676	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320619384	CHEV_2_172374432	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs33524175					SNP	T	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390852 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	981 bp distal
Cpgi12824	CpG island 12824	within coordinates
Cpgi12825	CpG island 12825	327 bp proximal
Rr571697	regulatory region 571697	171 bp proximal
Rr571698	regulatory region 571698	1360 bp proximal
Rr571699	regulatory region 571699	1676 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	649 bp upstream
Tssr21967	transcription start site region 21967	704 bp upstream
Tssr21968	transcription start site region 21968	1829 bp upstream