rs33519203 SNP Detail

Summary

• ID
  rs33519203
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17088009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTTCGCTG TGAACCAGGT
  GAGTTTAGAG TGACTTGTTG GTCTGCAGAT TGTTCCGCTA TCATCGGATC GTCTCAAATT
  TTTGAAAGGT TGTCAAGGCT TGAAAACCCT TTCTTAGTTT TATCAAATAG GCTGTTTTGA
  TAAACTGGTC ATAGTCTTAG GGTCCAAGAG TTATAAATAC TAGAGGTTGG CCTCCAGCCT
  M
  GCTGGGGTTT GTATGGTCTC TCCATATATT TTTTAGAAAT GTTGTAATCT TCCTGGTGGG
  GGTCCAAACA CATTTCTCCA GTACAGTTTA TTGTCATTCT CCAACTTCCA TAACTGGAAG
  ACCAGAGGCA GGTGCCTTTG ACCTCTGAAT ACAGCTAGTT TTCAGTAGTT TTAAAAACTC
  ATTAGGGCTG GAGAGATGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47808298	NES11712896	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33519203					SNP	A	A	A	A	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808298	NES11712896	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17088009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			195 bp distal
Rr626763	regulatory region 626763			294 bp distal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant