rs33519200 SNP Detail

Summary

• ID
  rs33519200
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17087898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCCTGC TGGGCACAGT
  GTTTTCAAGC TTAAAATAAT CCTTTCAGCT ATGTAATTTC CCAAACTGCT CAGGAGATGT
  TTTTTTTAAA AAGCTCACTC CTGAGAGAGG TGCTTTCGCT GTGAACCAGG TGAGTTTAGA
  GTGACTTGTT GGTCTGCAGA TTGTTCCGCT ATCATCGGAT CGTCTCAAAT TTTTGAAAGG
  Y
  TGTCAAGGCT TGAAAACCCT TTCTTAGTTT TATCAAATAG GCTGTTTTGA TAAACTGGTC
  ATAGTCTTAG GGTCCAAGAG TTATAAATAC TAGAGGTTGG CCTCCAGCCT AGCTGGGGTT
  TGTATGGTCT CTCCATATAT TTTTTAGAAA TGTTGTAATC TTCCTGGTGG GGGTCCAAAC
  ACATTTCTCC AGTACAGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47808294	NES11712894	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33519200					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808294	NES11712894	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17087898 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			84 bp distal
Rr626763	regulatory region 626763			183 bp distal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant