rs33519198 SNP Detail

Summary

• ID
  rs33519198
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17087729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTCGTTG GTATGTTGTA
  TTGTTTGGGG AAGGACAGAG GGTTGCTTTA CAGTCTCTGT TTATTGAATG CATGAATGAG
  GAACCCAAAG ATGCCAGGGT GACCATTTCC CCTCTTCCCT TCACCACCTT TCCTTTGTGT
  CTACCAAATG ACTTTTCAGA GGGCCACACC GCCCCCTGCT GGGCACAGTG TTTTCAAGCT
  K
  AAAATAATCC TTTCAGCTAT GTAATTTCCC AAACTGCTCA GGAGATGTTT TTTTTAAAAA
  GCTCACTCCT GAGAGAGGTG CTTTCGCTGT GAACCAGGTG AGTTTAGAGT GACTTGTTGG
  TCTGCAGATT GTTCCGCTAT CATCGGATCG TCTCAAATTT TTGAAAGGTT GTCAAGGCTT
  GAAAACCCTT TCTTAGTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47808292	NES11712893	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		G	T	T	G		G
ss321753500	CHEV_6_17037730	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33519198					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808292	NES11712893	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17087729 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			within coordinates
Rr626763	regulatory region 626763			14 bp distal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant