rs33517741 SNP Detail

Summary

• ID
  rs33517741
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17110545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATTTC TGAAGTTTAA
  CAGAAAATGG AGACTCATAT GTACTCAAAG ATCCCACATC CTTGGATTAT GTGGGGATAT
  AATCACACAC TCCAGCACTC TAGCCTGAAG TGCCCTTTTT CCCTCTCGCT GTACTATCGA
  ATGCTCAAGT AGCTTTGTCT AATTAGTTTG CCCTTTCATT GGGAGCATGC CATTGGAGTC
  R
  CTAGTTAACA CAATAATTAA TTTTTAAACA TTCACAACAA AAAATGGAAT AGAATGATTG
  GAAAAGAAAT AGGGGGTAAA GTCTAAGGCC GCTATATCAT GCTTAAAGAA AACTGTGACT
  CTCAAAAATC AAAAGAAACT AGTACAAATA AGAGAGACTG CCTAAGGAAA GCAACTACCT
  ACTTCTCAGG CACTGCAACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47808632	NES11712344	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33517741					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808632	NES11712344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17110545 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626766	regulatory region 626766	939 bp distal
Rr626767	regulatory region 626767	134 bp proximal