rs33517738 SNP Detail

Summary

• ID
  rs33517738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17109976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAACTG TGGCTAATTA
  TTCTGTCCTT TCATGGGAAG CAAGTCATCG TAGCTTCTAT TTAATCTGAT AATATATTTT
  GAAACAATCA AAACAAAATG CCATTAACCT TTATGGTTGT TTTGAATGGC ATTTTAAATG
  ACATTTATAA AGGCTGTTAT TGATCTTTCT TCGATGTGCA TTTCCACAGG ATGTCTTGCC
  Y
  TTCACCCAGT AACAAAAGCA CCTTCTACCC AGTTACCATT GCTAGTCAAC CGCTATTGCA
  TGTAGACACG TTGGAGTCAA TTCTCCATAA ATAACATCTG ACTGAGGACT GGGATACCAT
  GGTAGAATTC AAAAGAAATC TGGGCTTAGG AGTCAAAACA GACACATGGG GAGATCCCAT
  GGAATCTCCT CTCCAGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47808628	NES11712340	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33517738					SNP	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808628	NES11712340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17109976 () rs orientation: forward

Symbol	Name	Function Class
Gm4876	predicted gene 4876	within coordinates
Gm53251	predicted gene, 53251	within coordinates
Rr626766	regulatory region 626766	370 bp distal
Rr626767	regulatory region 626767	703 bp proximal