rs33517337 SNP Detail

Summary

• ID
  rs33517337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17086987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATAAAA AATAAAAATC
  AGTTATACAG AGGATAGTGG TTCCCCTGTG GCAATAAGGT TTTTTTTTTC AGTACTGATC
  ACTGGGCCCA CAGCCTCCTG GATGCAGAGC AAGCATTTCT CCACTGAGCT GTGTGTAGCT
  CCCGTCCACA CCGAACTCCA TTTAACTGCA ACTTCCATGC TTCAGATGAT CATAGAAAAC
  R
  AAAAGACGTT TCAATAGCCA TTATGTCTGT ATACAGTGTA AGCTAAAGGG AGATATAATA
  AAGTCTGACA TATTAGTCTT CTTTAAAAGC TTGCATGTTT AATAAGCTCT AGGTGACAGG
  CATAAATACC TTAAAGAGTA ATGGCAAGAG GAATCCGTAT TTCCACAAGT AATGGATCAG
  CTCCTTATTT TTATTTCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47808270	NES11712882	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G		A
ss321753489	CHEV_6_17036988	CHEVERUD	SCREENING_POP	f	SNP											A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33517337					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808270	NES11712882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17086987 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			557 bp proximal
Rr626763	regulatory region 626763			707 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant