rs33516647 SNP Detail

Summary

• ID
  rs33516647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17086560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGGTTT GCTGATAACT
  ATATGCAGAG TTGGTTGACT TCTTTGCTGT CTTCCGGATT TCCTGTGATG CCCCAAATAC
  AGAATATGCC TTTCTGAATG GCAGAGGAGT TTATGGTAAC CCTTCCTCAC TGTCAGTTAT
  TAACAATGCA CTCCTCGTGG CTCACACCTA GTATTGCAGT GTAGTCAGCA CCCATGCTCC
  R
  TTGCGCGTCC ATATCCTAGG TGCCAAGAAA CGACACAATG TTGAATTCTT AAAAGTTATC
  TCAGAAGTAG TTTTATCACT GAGAAGCTAA TTTTTGAATG AAATGCATGT GTCTGAAAGA
  CAGAAGATAA TGAACCCCAA AAATCTAAAA AAGGAAACCA GCTCTTTCAA AGGACATAAA
  AGTTCTTCCA CATGCCTACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47808258	NES11712875	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss321753483	CHEV_6_17036561	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33516647					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47808258	NES11712875	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17086560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626762	regulatory region 626762			984 bp proximal
Rr626763	regulatory region 626763			1134 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant