rs33516486 SNP Detail

Summary

• ID
  rs33516486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAAAGGA ACTAGGAAGC
  AATGTAAAAT ACACCGGGAA ATGAGGGCAC TTAAGAACTG AATGATGCGG GCACCGCCAC
  CAGAGGCATG CATCTTCTGG CATTCCTTCA GAAGGAGCAA GAATGGGTTG TCTTTAAAGA
  GCCCCTAATG ACCTGGCTAA CGGCACAGCC TCAAACCACC ACATCGCGAA ACAAATCCCA
  Y
  CAGTGGGAGA CAAGGCTGGA GGAGGCGCAT TAAAAGATCC ATCCATTCAC TAATGCCACC
  CTGGCTGTCA CCGGCCTGGG ACGCGCACAC TCCCCGGCAC TGCCACCTGC TTTCTACTTC
  CTCGGGGAGA GGTGGTGGCG CGCGGGTCCT GGTCCAGCGG CTCCAAAGGC AGAACTAATG
  ATGAATCCGT GACTCCTAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45287581	mCV25142689	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss146954248	ENSMUSSNP5305759	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss320397651	CHEV_2_94246192	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33516486					SNP	C	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236380 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	672 bp upstream
Cpgi11962	CpG island 11962	within coordinates
Rr561373	regulatory region 561373	within coordinates
Rr561374	regulatory region 561374	97 bp proximal
Rr561375	regulatory region 561375	442 bp proximal
Rr561376	regulatory region 561376	634 bp proximal
Rr561377	regulatory region 561377	667 bp proximal
Rr561378	regulatory region 561378	721 bp proximal
Tssr19003	transcription start site region 19003	684 bp upstream
Tssr19004	transcription start site region 19004	728 bp upstream
Tssr25328	transcription start site region 25328	1033 bp upstream
Tssr25329	transcription start site region 25329	612 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron