rs33515859 SNP Detail

Summary

• ID
  rs33515859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:3443837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAATTA CCGCCTGTAG
  CTCGGTGAAA GAAACGACTG GCCAAGCGAG GGAAAGTTTC TTGAAGTTTT TCACCCTCCG
  TCTTTGCTCG GGGCATTGGG ACCTGGAGCT GACGTTCAAG GCCCCTTTCC ATTTCTTGCT
  GGGAGCGTGA CGAGTATGGG CGATTTGAAG ATTGAAGGGC TTGGGTTTGG GTTTTTTGTT
  Y
  GGGGGTTTTG TTGTTTTGTT TTGTTTTGCA GGTGTATGGA TGGAATGGTT AGCCTTTGAA
  CTGTGAGGAG AGAAATCTTG AGTGTCACAT CAGACCTGAG CTTCTGGTCC CAGTTCTATC
  ATATGAGCCA TGTAACATCA CCAAGCCTCA GTCTCTTCCT TGTCAAAATG AGAATAAGAA
  CTTGATGTGG GTTCAGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
ss46284879	mCV22562701	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss148543593	ENSMUSSNP6636226	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J
rs33515859					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3443837 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arhgef18	Rho/Rac guanine nucleotide exchange factor 18			Intron
				Noncoding-Transcript-Variant
Cpgi20017	CpG island 20017			485 bp distal
Gm64114	predicted gene, 64114			1402 bp downstream
Rr381632	regulatory region 381632			within coordinates
Rr658901	regulatory region 658901			789 bp distal
Rr658902	regulatory region 658902			877 bp distal
Rr658903	regulatory region 658903			201 bp distal
Rr658904	regulatory region 658904			785 bp proximal
Tssr76040	transcription start site region 76040			822 bp downstream
Tssr76041	transcription start site region 76041			784 bp downstream