AGGGACCCAG CTGGCAGTAC TCTCCACTCC TGGTGTCTTA AGTTCTCTGA CTGTGCCGTG GGAACTGATT TTTATTCTGC ATGTCCCCCC TCCCCCACCT TCTCTTTGGG CCTCACTCCC AGGTTATCTC GGATTTCTCT GCTTCTTTCT CAGTTTCCTC TACAGCTATC TCAGCCATTA CTGCAAGCCT CTCGTTTTTC K TTTTGGTGAA AACATGCCTG TACTTTGCTG CTTCCTACAC ACACTCCAAT TAGACAGACA GGTGGGGAAC AAGGGTCAGT CAATCACTGT GCAGAAACCT CGCAGATGTC AAGAACGATG GCACTATTCA AATCCTGGGC TACAGCATCT TCATAAAGCT GTTCAGTGTG CTTCTGTCTG AATGACCCCT CTTTGTAGCC K = G/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47808164 | NES11713035 | PERLEGEN | MM_PANEL2 | f | SNP | T | T | T | T | T | T | G | T | T | T | G | T | T | G | T |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33514772 | SNP | T | T | T | T | T | T | G | T | T | T | G | T | T | G | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47808164 | NES11713035 | PERLEGEN | MM_PANEL | f | SNP | G/T |
Location: Chr6:17079777 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm4876 | predicted gene 4876 | within coordinates | ||||||
Rr626760 | regulatory region 626760 | 1800 bp distal | ||||||
Rr626761 | regulatory region 626761 | within coordinates | ||||||
Tes | testin LIM domain protein | Intron | ||||||
Noncoding-Transcript-Variant |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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