TGCTTGCTTC CTCTAGGTGC ATAACTGATA GTTACTGAAC CCTCTAAAGT TTAGAGTCTA AACGTTACCA TATCCCCATC CTCAACTGAG CGTGCCAGTA GACAGAGAGT AAGAGTATAA TTGAAACTAA CGTTTTAACG CACCATGTCT GTAGCCTACA CATAGAAAAC AAATCATTAT CATCGATAAC ACCATTATCA M AAAATCAGTG TACAGGGAAG TAAACGGTGC AGAGATCATC ACACCATTTA CTAAGCACCT GATGGCATCA TCAAGAATTT CGCAATGACG TACTTCAGCA GATTATTGCT AGCGGTGCTT TGCTGAACAC AAAGAAATAC TTCTTTCCAG CCCAGTACCC GGGATGTGCT ACAATACTGG ATTTAATTAT TTTCCTTTTC M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss47808146 | NES11713449 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | C | C | C | C | C | C | C | A | C | C | A | C | |
ss133009895 | ENSMUSSNP124250 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | A | ||||||||||||||
SNP Consensus Information | |||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
MSM/Ms |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs33513866 | SNP | C | C | C | C | C | C | C | C | C | C | A | A | C | C | A | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss47808146 | NES11713449 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr6:17077395 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm4876 | predicted gene 4876 | within coordinates | ||||||
Rr626760 | regulatory region 626760 | 426 bp proximal | ||||||
Rr626761 | regulatory region 626761 | 1796 bp proximal | ||||||
Tes | testin LIM domain protein | Intron | ||||||
Noncoding-Transcript-Variant |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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