About   Help   FAQ
rs33513866 SNP Detail
Summary
  • ID
    rs33513866
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr6:17077395 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCTTGCTTC CTCTAGGTGC
    ATAACTGATA GTTACTGAAC CCTCTAAAGT TTAGAGTCTA AACGTTACCA TATCCCCATC
    CTCAACTGAG CGTGCCAGTA GACAGAGAGT AAGAGTATAA TTGAAACTAA CGTTTTAACG
    CACCATGTCT GTAGCCTACA CATAGAAAAC AAATCATTAT CATCGATAAC ACCATTATCA
    M
    AAAATCAGTG TACAGGGAAG TAAACGGTGC AGAGATCATC ACACCATTTA CTAAGCACCT
    GATGGCATCA TCAAGAATTT CGCAATGACG TACTTCAGCA GATTATTGCT AGCGGTGCTT
    TGCTGAACAC AAAGAAATAC TTCTTTCCAG CCCAGTACCC GGGATGTGCT ACAATACTGG
    ATTTAATTAT TTTCCTTTTC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss47808146 NES11713449 PERLEGEN MM_PANEL2 f SNP C C C C C C C C C C A C C A C
ss133009895 ENSMUSSNP124250 ENSEMBL ENSEMBL_Sanger f SNP C A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs33513866 SNP C C C C C C C C C C A A C C A C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss47808146 NES11713449 PERLEGEN MM_PANEL f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:17077395 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm4876 predicted gene 4876 within coordinates
Rr626760 regulatory region 626760 426 bp proximal
Rr626761 regulatory region 626761 1796 bp proximal
Tes testin LIM domain protein Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/18/2025
MGI 6.24
The Jackson Laboratory