rs33482049 SNP Detail

Summary

• ID
  rs33482049
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172390747 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGTTTGGG ATGAAAAAAA TTAACTATAA CAATTAGGCC AATTATTTTC GTTTCGTTGA
  ATTAAAAAAT AACACTGAGT ATTGCTTTTT GGCTTGGACG GAAAATCTTG GGGTGCAGCA
  GCATTCTGTG GATAGAAGCT TTGCTTTCTG CCTCCCATGG GACGAGGTGT GCCCATATCT
  CAGGGCGACC TCCCTGTAGT CCCCCTCCCA CTTTACAGCA CCTCATTCCA CGCGGCCCGT
  GGCGATGGAG GTTTATTCTG CCTGGAACCT CTTTTCCTGG GCGAGTAGAG GCTTCTGAAG
  R
  GCCGCCCGTG ACAGCTGCAG AACCGGCGCT CCGCAGGGCT GGGCATCGCA GCAGGGATGG
  GCCTGGGCGG GGGAGCTCGG GTCTCCTCCA GCCGCGGCCC GCAGTCAGAT ACAGCTTCGG
  GCTATAGCTG CAGCACGCGG TTGTCCGATT TATTCACAGC AGGTATTACC GTGAGTTTCC
  TCTTTGGAGC TGGGGGAGCG GACTCCTTCT CGGAATCCTT CCCCTCCCTT CCCTCAGTGG
  GCAGGTCAGT AAAGTACCCA GGGAGAGGGA AAGGGGGGGG GGGGGCACTA GGGAACAGTG
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45284191	mCV23507072	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33482049					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172390747 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12823	CpG island 12823	876 bp distal
Cpgi12824	CpG island 12824	within coordinates
Cpgi12825	CpG island 12825	432 bp proximal
Rr571697	regulatory region 571697	276 bp proximal
Rr571698	regulatory region 571698	1465 bp proximal
Rr571699	regulatory region 571699	1781 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	754 bp upstream
Tssr21967	transcription start site region 21967	809 bp upstream
Tssr21968	transcription start site region 21968	1934 bp upstream