rs33481291 SNP Detail

Summary

• ID
  rs33481291
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120807206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA AGCACGATTT GTATAAAAAT
  R
  TTTATTCTTA ATAGCAACAC ATATT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss45284098	mCV22579030	ABI	CRAMUS_MOUSE	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs33481291					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120807206 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	217 bp proximal
Gm55820	predicted gene, 55820	926 bp downstream
Rr397244	regulatory region 397244	1852 bp upstream
Rr563749	regulatory region 563749	723 bp distal
Rr563750	regulatory region 563750	500 bp distal
Rr563751	regulatory region 563751	189 bp distal
Rr563752	regulatory region 563752	within coordinates
Rr563753	regulatory region 563753	312 bp proximal
Rr563754	regulatory region 563754	318 bp proximal
Rr563755	regulatory region 563755	384 bp proximal
Rr563756	regulatory region 563756	766 bp proximal
Tmem62	transmembrane protein 62	Noncoding-Transcript-Variant
Tssr19722	transcription start site region 19722	356 bp upstream
Tssr19723	transcription start site region 19723	423 bp upstream
Tssr19724	transcription start site region 19724	523 bp upstream