rs33479084 SNP Detail

Summary

• ID
  rs33479084
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118945194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGTGTTTTG TCTGCATGTA TGTCTGTGTG AGGATGTCAA
  ATCTTGGTGT TGTAGACAGT TGTGAGCTGT CATGTGATGC TGGGAATTGA ATCTGGGTCC
  Y
  CTGGAAGAGC AGCCAGTGCT CTCAACCTGA GCCAGTCTCA ACACATATTT TATGAAGGTC
  ATATAGTATT TTATGAACTT GGGAATGGGT GTGGGGGCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45283613	mCV23833204	ABI	CRAMUS_MOUSE	f	SNP	T	C	T	C
ss320473771	CHEV_2_118940449	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33479084					SNP	T	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118945194 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12105	CpG island 12105			1416 bp distal
Gm57476	predicted gene, 57476			1883 bp upstream
Rad51	RAD51 recombinase			Intron
				Noncoding-Transcript-Variant
Rr563416	regulatory region 563416			1896 bp distal
Rr563417	regulatory region 563417			1393 bp distal
Tssr19603	transcription start site region 19603			1831 bp downstream
Tssr25799	transcription start site region 25799			1944 bp upstream